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When I use the default gpu mode:
```
python VirRep.py -i ../test/test.fasta -o vr_out -w 2 --use-amp --min-score 1000-5000:0.9,5001-10000:0.8,10001-Inf:0.7
```
It got `RuntimeError: No CUDA GPUs a…
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Hello!
This looked like a really nice tool to try and summarize output from antiSMASH for easier manipulations. However, it will not run because it is looking for index.html everywhere. I've attach…
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Since the Pfam FTP links have been discontinued, would you update the respective `deepbgc/data.py` script that downloads the Pfam databases?
I would create a pull request myself but saw that a [bra…
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Hi,
I'm a bit confused. Is SanntiS only designed to predict BGCs themselves, without predicting the genes within these clusters? Because the output files appear to only contain information about th…
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Dear Karsten Wüllems,
I’m a Ph.D student in France on Brassica napus (rapeseed) specialized metabolites against pathogens. I want to apply your pipeline “Analysis of GRaph mapped Image data NEtwor…
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Hello,
**UPDATE TO POST: After some more troubleshooting, I narrowed down the issue to ClusterFinder data that is output by the DeepBGC pipeline to the antismash.json file.**
I am testing the co…
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### Description of the bug
I seem to be getting errors like this with v1.1.1 with the `docker` profile:
```bash
nextflow.exception.ProcessUnrecoverableException: Task failed to start - CannotPu…
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Hello @raufs,
I am using lsaBGC, and I have encountered a few issues that I need a little help with. The same issues have occurred on my UNIX (Macbook) and Ubuntu (remote machine).
Here are the…
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### Description of feature
deepBGC currently writes the files in parent directory with sample name and within that a subdir again with sample name and within that the output results
example: `../re…
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Hello,
I am very new to posting issues here, so I apologize for any mistakes. For antiSMASH v6 and v7 beta, I have tested the sideload feature using a JSON file output by DeepBGC (DBGC). I have not…