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I want to know what is the training and testing dataset for ipdSummry model to detect DNA methylation.
In this paper "Direct detection of DNA methylation during single-molecule, real-time sequencin…
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5mC and 5hmC are common DNA methylations. Single-base methylation seq data are
quite different from histone modification ChIP-seq data in the way of how the
methylation information is encoded in…
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Hi,
When I tried to use the cgmaptools fragreg command, I found the plot ranged from 0-100% DNA methylation level. However, some samples had very low DNA methylation (0.4~0.9), is any way to set t…
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Please provide as much information as you can:
* **GO term ID label:**
GO:0035516 broad specificity oxidative DNA demethylase activity IEA with PTHR16557:SF2
GO:0035552 oxidative single-strand…
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I am using megalodon to infer 5mC in all contexts CG, CHG and CHH. After some investigation, it seems that Megalodon version 2.5.0 + Guppy basecall server 6.2.1 do not work with old rerio models such …
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## Description
As a bioinformatician, I would like to see what the DNA methylation looks like across all cells in a data set, in a small-ish region, in order to see the data underlying DMRs, enrich…
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@singha53
I am doing DNA methylation analysis on my dataset. A lot of places have mentioned coverage. But I am not quite able to grasp the concept of what coverage is in a DNA Methylation data. I …
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Some recent BS-seq programs store methylation information in a SAM tag. One example is [Bismark](http://www.bioinformatics.babraham.ac.uk/projects/bismark/Bismark_User_Guide.pdf). A flag for `--methyl…
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**Tool Details**
- Name of tool: `mcall` from `MOABS` package
- Tool homepage: https://github.com/sunnyisgalaxy/moabs
- Tool description: DNA Methylation Caller
- Data suitable for MultiQC plo…