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When uploading multiple fastq files, ENA's API ussually throws a timeout that makes the process to crash. `upload_to_ena` currently handles it by dividing the total number of samples into batches of 2…
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Documented here: https://docs.google.com/document/d/1RPHmK8Pvm9UxSa21Ej3MkGoGYO9baSxwxk_dOuWWyNE/edit
Swagger/OpenAPI: https://www.ebi.ac.uk/ena/portal/api/swagger-ui.html
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Start your first task with my fork of the ENAS repository:
https://github.com/ahundt/enas/tree/good_fixes
Modify the cifar10 code to also support running fashion-mnist
Make sure it is possible to p…
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Currently there is no handling of revocation or updates. This means that a new version will be submitted as a new sequence to ENA. This needs to be added and handled correctly.
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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is a EGA checklist.
This is not available in ENA checklist API, hence not available in schema-store.
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Hello,
We're looking for an easier way to use kernel bypass together with the ENA driver. For that, openonload would be a perfect fit. However, at the moment, it doesn't work due to ENA's lack of s…
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I read the documentation and it seems that PF_RING ZC does not support Amazon's ENA driver. Can you add it?
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I guess this could be done using `-p` in both `prefetch` and `fasterq-dump` and then hooking the stderr for those processes straight into `sys.stderr`. And then for ENA downloads, we could just add so…
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We are trying to compare the performance of AF_XDP socket with regular (AF_INET) socket on AWS EC2 instances.
On ena driver version 2.7.1, driver reset occurs when a load is applied using AF_XDP zero…