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This includes:
* ENSEMBL:ENSP00000382856
* ENSEMBL:ENSP00000385720
* ENSEMBL:ENSP00000385721
* and many others
May or may not be related to https://github.com/TranslatorSRI/Babel/issues/153
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Description:
Create a Python script to get gene and transcript information from the Ensembl REST API for a given species and gene symbol. The script will take details like chromosome, start and end p…
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Hi!
I am trying to use pyham with orthoxml files from ensembl but I am struggling to understand which species tree I can get from ensembl to use in pyham.
For ensembl data, it needs to be a new…
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Hi
The tool is not working with old assembly. I want to find Ensembl Transcript ID and Gene Symbol conversion for mm9. My code is below:
#dataset = Dataset(name='mmusculus_gene_ensembl', host='htt…
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@ahwagner when talking about #76 :
> 7:140,485,608, which aligns directly adjacent to ENST00000644969.2_6 / NM_001374258.1 ([browser view](https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&lastVirtMod…
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### Aims/objectives.
What if we use *e.g.* Ensembl 110 (for sequence context, annotation in general such as features, gene assigment, and complementing RBP annotation) and link reported sites to Ense…
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I am attempting to annotate genomic data based on GRCh37 using Ensembl version 75, as it is the only version suitable for my needs. However, Ensembl version 75 has differences compared to newer versio…
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### Description of the bug
Hi am working with the pipeline, in the test working fine. with samples do not report the VARIANT_CALLING, there is no error in the run.
How I can make that processes?
##…
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Hello,
What ensembl version are the ensembl IDs drawn from in the GTEx annotation files?
Thanks
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Pertains to #901
- [ ] form of ensembl URIs. The slash form is more canonical ie https://identifiers.org/ensembl/ENSMUSG00000019772 not https://identifiers.org/ensembl:ENSMUSG00000019772. Also in…