DessimozLab pyham issues

DessimozLab / pyham

MIT License

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issues

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How to draw a singleton？

#27 billzhanghantao opened 3 months ago
1
internal node naming bug

#26 max-baer opened 7 months ago
1
Can't create pyham.Ham() object

#25 max-baer opened 7 months ago
1
ensembl tree

#24 rresendepinto opened 1 year ago
1
Some questions when following the tutorial of pyham

#23 zmz1988 closed 1 year ago
5
orthofinder compatibility to pyham

#22 eli1199 opened 1 year ago
0
Tutorial link not available

#21 alouis72 closed 2 years ago
2
Extract genes from specific nodes

#20 eli1199 closed 2 years ago
12
AttributeError: 'NoneType' object has no attribute 'features'

#19 gmartinezredondo opened 2 years ago
4
Fixes parsing problem with directly nested paralogGroup nodes in orthoxml

#18 alpae closed 2 years ago
0
More species in the species tree than in the orthoXML file

#17 gmartinezredondo closed 2 years ago
4
Empty Ham object?

#16 gmartinezredondo closed 2 years ago
2
pyham.Ham throws error with OMA species tree and HOGs

#15 Thyra closed 1 year ago
4
(Error in treeprofile) KeyError: '2 node(s) founded for the ancestral genome

#14 maiumy closed 2 years ago
2
add py2 checks

#13 alpae closed 3 years ago
0
create workflow to push to pypi

#12 alpae closed 3 years ago
0
Create python-package.yml

#11 alpae closed 3 years ago
0
fix for "expect subclass obj of 'AncestralGenome' bug"

#10 ethanbass opened 3 years ago
0
Taxonomy read function broken in OMA Browser REST API

#9 ethanbass closed 2 years ago
3
added quoted_node_names option to taxonomy class to fix newick import error

#8 ethanbass closed 3 years ago
0
TypeError: expect subclass obj of 'AncestralGenome', got ExtantGenome

#7 ethanbass opened 4 years ago
3
Treeprofile displaying help but no tree

#6 ak-watson closed 4 years ago
3
How to get a tree for current OMA release?

#5 olgabot closed 2 years ago
11
How to get all HOGs for a group of species?

#4 olgabot closed 1 year ago
0
fix bug in treeprofile for noname level group

#3 cactuskid closed 3 years ago
1
wrong tree loaded for oma-server based ham anlaysis

#2 alpae closed 5 years ago
0
Way to filter out minor splicing variants

#1 alpae opened 5 years ago
1