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Hi again!
I have ContScount crunching an initial 50 public genomes from different animals and single-cell eukaryotes - using NCBI nr database - and have gotten back results on 7 of them. Here are t…
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- [x] Subset data for Eukaryotes
- [x] Merge data-sets
- [x] Add meta-data
- [x] Create stacked barplot and line-plot
- [x] explore COG data
- [ ] explore KEGG data
- [ ] explore GOs
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- Exclude _**Apis mellifera**_ and **_Varroa_**
- Include Bacteria
- Include some eukaryotes: **_Nosema_**, trypanosomes such as _**Crithidia mellifica**_
- How much technically it will affect us t…
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I have the singleM otu tables; I want to combine them and construct a per-site matrix. When I did that, I only got the prokaryotic members; how can I get this from all of the otus identified with sin…
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This is related to issue #189 raised earlier.
My student Vladislav and I are using charcoal to decontaminate draft genome assemblies of nematodes. charcoal is wondrously efficient at ridding such …
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Hey,
I have been working on metagenomic data that comprises yeast and bacteria in the microbiome . We did a WGS on our samples in Illumina platform. From the sequencing results, I'm able to resolve…
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### Description of feature
I was reading the SourMash documentation, and noticed it can be used for genome classification. Could be a nice one to have - there are pre-made databases available for bot…
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Dear SortmeRNA group,
I am using SortmeRNA version 4.3.4 to extract 16S rRNA sequences from paired metagenome sequences and then using qiime2 to annotate these 16S rRNA sequences. But, I've annotated…
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Hi there,
Thanks for your work with DeepVirFinder. I've been trialing it with some environmental metagenome data, but was also interested in whether it would be appropriate for use with identifying…
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Hi!
I would like to run the module A for an eukaryote organism (Mus musculus). For now the analysis has been running for a month (and I think it will take a lot more time).
I've been looking at bo…