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Hi,
I am trying to design primers around this target exon (0-based start, 1-based end format):
+chr19:7876692-7876740
When I enter the target exon's coordinates alone, primer design is successf…
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Could you please clarify how to provide DASH the correct input for the deletion in the flanking regions? The manuscript states:
"We use the b-allele deletion calls from Sequenza and make a flanking …
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I have a question, how do you choose the locus for co-localisation when co-locating? The original text says so: "We used default parameters to evaluate colocalization between GWAS signals and the expr…
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i think it would be relaly neat after v12 and everything that has died down to add a similar behaviour for flanking but for reach. with the rule that affects ignoring the first diagonal.
it would …
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Hi,
I am using getSequence to retrieve upstream sequence of a gene.
I followed the example that I found in the vignette but it did not work.
```
library(biomaRt)
ensembl = useMart("ensembl",d…
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Users would like to be able to extract sequence information flanking a SNP of interest. This is useful for designing KASP markers.
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Currently the AI sort of "twiddles its thumbs" when presented with a situation with no immediate solutions. The AI needs to be able to tell when it is in such a situation and then identify a task, tha…
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In GitLab by @NdranC on Mar 18, 2022, 21:04
I think it's a very popular rule to make flanking not grant advantage and instead do varied amount of things, like lower AC of the flanked creature, or inc…
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As suggested by Dr. Martin Hemberg following our recent email correspondence, I’d like to summarize some issues I encountered with TransposonUltimate (ReasonaTE and RFSB). I fully recognize and apprec…
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Hi @freeseek
I note that there are some indel records that gtc2vcf initially writes them but then `bcftools norm --check-ref x` filters them out. However, I was comparing to the [Dragen array outp…