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The tooltip on a gene that isn't profiled reads:
SOS1 is not in the gene panels of the selected molecular profiles, but detected as a fusion partner
![image](https://user-images.githubusercontent.…
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i am seeing the error:
```
Error, cmd: bash -c "set -euxo pipefail; cat /refbuild/GRCh37/starfusion/../annotation/Homo_sapiens.GRCh37.75.gtf | egrep 'IG_V_gene|IG_C_gene|IG_D_gene|IG_J_gene' | awk '…
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TLDR: If you cannot produce any fusions, it may be an issue with your GTF file.
The GTF file:
a) cannot use `_` in chromosome names
b) in column 9, must have a `gene_name` field
c) in column 9…
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Hi Daniel,
We noted an an instance in which FusionCatcher reported a long sequence of Ks in the predicted fusion protein. When we tried to reconstruct the protein sequence we got a different protei…
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### Description of the bug
```bash
nextflow run main.nf \
-ansi-log false \
-profile docker,gcp \
-work-dir gs://path/to/bucket/scrnaseq/work \
--input samples.csv \
--protocol…
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![Uploading 微信图片_20240401165555.png…]()
Excuse me. I want to answer you a question. How can I solve the error shown in the picture?
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Filter and prioritize fusion calls with [annoFuse](https://github.com/d3b-center/annoFuse)
Prerequisites:
- human samples (looks like hg38 only)
- Arriba results (RENEE already does this!)
- Star …
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Hi, I really like your approach for modelling ordinal data and am trying it on my data. I have gene expression data and ordinal response data as well as categorical unpenalized factors. I have split m…
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Hi,
I'm trying to run FusionInspector for a set of probable fusion genes. I'm using STAR-Fusion version: 1.10.0; FusionInspector version: 2.5.0; STAR version: 2.7.8a and the reference genome is GRC…
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In the two-tier loop, vmtag doesn't seem to work as I expected.
is there anyway to do this?
```
from docxtpl import DocxTemplate
tpl = DocxTemplate('templates/vertical_merge_vm_loop2.docx')
tpl…