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I've been playing around with GARD and ran it on 10 and 20 randomly sampled Pango sequence founders.
When I tried it out on 27 sequences, however, I got an error:
```
hyphy gard --alignment sa…
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Hello,
I am running the pipeline version v4.3.4 on a slurm cluster.
The first steps work fine (windowmasker, minimap, chunk_stats, busco and cov_stats).
I get an error for the diamond steps.
Here…
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Hi, I've encountered a warning and error in rvtests log when I try to conduct a GWAS. My code looks like this:
```
./software/rvtests/v2.1.0/executable/rvtest \
--inVcf ./derived_data/genetic_d…
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Dear author, Is it possible to include mobile genetic element (MGE) profiles analysis? Thanks a lot!
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Dear all,
I am a beginner of using this powerful software. After reading the manual and other related issue, I would like to confirm about the input file format and input requirement.
1. For the…
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Hello!
I am performing multitrait analysis in an exploratory way after selecting traits based on the significant genetic correlation using LDSC. I performed MTAG analysis for those pairs of traits…
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It would be really good to have an optional type_id added to all linker tables in chado consistently. That way we could indicate what type of link is being made and remove a lot of ambiguity that it c…
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Let's integrate the unification of each step as "low-hanging fruits" on the "lattice of the Tree of Knowledge" in the "Garden of Eden," where "genetic algorithms mutate ideas." This will symbolize the…
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### Need
As a clinical geneticist, I need an improved CNV workflow for targeted panel sequencing (UMI & non-UMI), in particular for cfDNA samples, to accurately detect genetic variations.
…
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Aim for comparable Garki scenario using Co-transmission model and FPG model with comparable analysis of genetic feature