-
Currently we have a REST endpoint that returns the number of genes within a region, like this:
https://knetminer.com/araknet/countLoci?keyword=4-1000000-2000000
New graphql endpoints are needed to…
-
For our customers we host a custom .genome file on S3, which we provide via URL in a session.xml.
Everytime IGV loads such a session.xml, the .genome file is downloaded again (even though URL, name a…
-
**Describe the bug**
Hello, I'm trying to run SCENIC+ using SnakeMake in a linux machine (centos 9), on the tutorial dataset.
I ran scATAC-seq preprocessing in python (using pycistopic, using the tu…
-
### Contact Details
_No response_
### Description of changes
[workbook (9) (1).xlsx](https://github.com/ranchobiosciences/Data_Modeling_Issues_Templates/files/10709110/workbook.9.1.xlsx)
-
[extract_CRISPRdb.py](https://github.com/phageParser/phageParser/blob/master/parserscripts/extract_CRISPRdb.py) returns the start and end positions of CRISPR loci in bacterial genomes by searching the…
-
If I run kmercamel on human genome, the output FASTA file starts with `>chr1 CP068277.2 Homo sapiens isolate CHM13 chromosome 1`.
This is misleading. It's not genomic sequence, it's chromosome 1, e…
-
Hello, I'm a graduated student studying bioinformatics in South Korea.
I'm trying to do detect extrachromosomal DNA (ecDNA) in nanopore long-read targeted sequencing data.
I followed the workflow …
-
Thank you for creating this great tool!
I am having trouble using parameters that are available in the API version of coolbox in the CLI version.
For example, in API mode, one can use cmap, depth…
-
##### Project link
https://github.com/orgs/geneontology/projects/TBD
##### Project description
Currently, the only information that can be carried by the GPI format is whether or not an identif…
-
**Describe the bug**
When I use the package @jbrowse/react-linear-genome-view, I encounter the following error:
`
Uncaught TypeError TypeError: Cannot read properties of undefined (reading 'muiNa…