-
**Geneticists and genomics scientists cannot natively get data from S3 when it's compressed using the most common format for that data type**
Tabular data in genetics and genomics is often compressed…
-
Hi, I'm trying to use your tool LEMON to establish a pipeline for HGT detection as it looks very promising. Unfortunately I'm not able to complete the installation as I encounter an error in the "make…
-
Hello. I started with the [Loading 10x Genomics Data](https://immunarch.com/articles/web_only/load_10x.html) tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/singl…
-
how to use the reference store sequences as reference, as I followed the few workshops, and in these instructions were shown on how to create a reference store and store reference human seq and so on …
-
Opening this issue to track the development of the `tf.data.Dataset` API for `tfio.genome` ops discussed in my last PR #620.
We should be able to build a `tf.data.Dataset` in eager mode by combini…
-
Hi,
I find threads doesn't work under the following case and I must set -j > 30 to run this command:
![image](https://github.com/snakemake/snakemake/assets/29703450/dea04ba4-a5c9-4301-a573-8a1b74278…
-
Folks occasionally but consistently ask for this information on the forum and our current answer is that we provide these files as is. For the new GATK4 documentation, which we plan on releasing on Ja…
-
Hi, I have been using `scry::devianceResiduals()` for preprocessing and transformation in 10x Genomics Visium data, and have been running into some possible stability issues and warnings.
I am runn…
-
I thought it might be helpful to showcase various plots from this project in an example. As I discussed in the last tskit meeting, we are seeing highly fragmented ancestors in the trees inferred from …
-
It's called d4 (meaning D^4= Dense Depth Data Dump) and its described in https://github.com/38/d4-format and presented in a poster here: https://drive.google.com/file/d/17vLmwMcAn0l3-tzzn1DjUVkF0MXLxS…