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### Description of the bug
When running `pgsc_calc` on a samplesheet with multiple sampleset, I get the error: `2 missing chromosomes detected! Maximum is 1. Check your samplesheet.`. Splitting the f…
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### Description of the bug
My students and I are having several issues with GEMmaker on our cluster. The most important and consistent issue is GEMMaker is running through the workflow VERY QUICKLY …
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## Check Documentation
I have checked the following places for your error:
- [x ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/pangenome pipelin…
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### Description of the bug
(possibly related to #254 ?)
I ran into this error while testing the pipeline on a small server (VM):
```
N E X T F L O W ~ version 23.10.1
Launching `https://g…
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### Description of the bug
[issue in downloading](docker: failed to register layer: rename /docker/image/overlay2/layerdb/tmp/write-set-2818107168 /docker/image/overlay2/layerdb/sha256/968f331861f0…
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### Description of the bug
I am trying to run `nf-core/smrnaseq` pipeline. I get the following error:
ERROR ~ Error executing process > 'NFCORE_SMRNASEQ:SMRNASEQ:MIRTRACE:MIRTRACE_RUN (1)'
…
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### Description of the bug
When I run `mag` on the `LSF` platform that is not connected to the public network, an error is always reported during the `Nextflow` initialization phase: `ERROR o.p.updat…
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### Description of the bug
I have downloaded the BUSCO datadase and whenever i give the local path to the folder this is the error i get
### Command used and terminal output
```console
[nf-core/mag…
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### Description of the bug
When I attempt to run `nf-core/mag`, the script, immediately after startup, errors with the following unusual output:
```
Is a directory
-- Check script '/ref/djs…
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## Bug report
### Expected behavior and actual behavior
Hello, hope you are doing well!
I expected to be able to run `nf-core/rnaseq` using AWS Batch. We created a the first two CloudForma…