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I didn't get any results after entering the command. What could be the problem?
Could you possibly spare some time to take a look for me, please? I would greatly appreciate your help. The command I…
xubiy updated
1 month ago
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I am running `hifiasm` of ~1.4GB genome using both the ONT and PacBio HiFi data. The program is stuck at `[M::ha_pt_gen::21255.245*7.18] ==> indexed 5753798835 positions, counted 251767750 distinct mi…
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Hello,
Thank you for providing this software! However, I encountered the following error when using phase_contacts_with_monte_carlo:
[0h 0m 0s] Loading GFA...
No index found, generating .gfai f…
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You who work on this program: Do you pronounce it ending with "azzem" or as "ay ess em" ?
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I get a segmentation fault when I try to run the RAFT stage using the following command:
```
COVERAGE=$(grep "homozygous" "${OUTPUT_PATH}/1_HIFIASM_ASSEMBLIES/${SAMPLE_NAME}/${SAMPLE_NAME}.errorco…
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Hi,
Is it possible to separate hifiasm into stages (e.g. separating the read-error correction step and the phased string graph generation step)?
The application that initially led us to ask for…
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Hi Brian,
I am using PASA to annotate a genome assembly following the PASA tutorial. The genome is ~500 MB and resulted in 400 contigs. EVM ran successfully and outputted 33k genes (with evidence f…
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In the review article "Genome assembly in the telomere-to-telomere era", @lh3 and @richarddurbin have mentioned that:
> When constructing an overlap graph, we discard a read contained in longer rea…
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Hello
I use hifiasm to assemble the Pacbio hifi data, and then use allhic to anchor the obtained haplotypes to the chromosomes. my genome is diploid, and 9 chromosomes (2x=2n=18). When I use K=9 an…
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Was there the mature manner to integrate this tools into assembly pipeline like hifiasm or canu? It seems that no alignment files are ever generated intermediatly during the assembly by hifiasm.