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Hello Prokka Team,
I am trying to run prokka on an Ubuntu 20.04 LTS laptop using a fresh install (installed 20FEB2022) of Prokka via conda (minconda3) and I'm not sure how to troubleshoot this is…
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### Description of feature
nf-core module: https://nf-co.re/modules/prodigal
BUSCO workflow: https://gitlab.com/ezlab/busco/-/blob/master/src/busco/busco_tools/prodigal.py?ref_type=heads
Target o…
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Hello and hope all is well. I'm running into issues reproducing this code (https://pyhmmer.readthedocs.io/en/stable/examples/performance_tips.html#Search-and-scan):
```python
import time
import…
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I want use your hmm with hmmer, for conj.hmm models there is no problem but with txss.hmm models hmmer can't use models.
For use hmmer, I must concatenate models with :
`cat *.hmm > macsyfinder_txs…
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Hi,
I installed saccharis 2 via conda in a separate env.
When I try running saccharis via command line
`saccharis.screen_cazome --fasta_file GH2_filter_test.fasta --out_folder out_test --threads…
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test: https://github.com/EddyRivasLab/hmmer/blob/bcd05b05c73f5c89583d4385cd692df190edc577/src/impl_sse/msvfilter.c#L615
primary function: https://github.com/EddyRivasLab/hmmer/blob/bcd05b05c73f5c89…
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Hi, I use hmmer tool to ananlyze my protein data, It worked before, but recently I found that nothing is writen in the hmmer.out file, only header. I don't understand what happened.
HMM Profile Pro…
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Hello, I'm trying to use `hmmer2gff` program. I first created my per domain hit table by using hmmsearch as the following:
`hmmsearch --domtblout dom_results.txt --cpu 10 hydrocarbon.hmm translated…
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### Description of bug
Hello,
Since the update to Spades 4.0, it seems that Pathracer no longer functions the way it did in the 3.16dev version. Since updating to the newest version, whenever I ru…
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I have run two trinity assemblies through the TransDecoder pipeline and was surprised to find that in one case the exact same number of transcripts was found whether or not I included the blast and hm…