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Hi, @anands-repo
I am trying to run a variant calling using the illumina model but I am finally getting files with not even one call, I don't know what's wrong. I am using the same code I used befo…
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https://blog.software.illumina.com/2020/07/30/announcing-the-release-of-bcl-convert-software/
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I'm wondering what would be the most appropriate method to go about using Brownie on paired-reads from metagenomic samples? I would like to use both the forward and the reverse reads for long-read err…
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Hi, the manual said the latest version of Racon support illumina reads, but what is the short-read format Racon support? Should I put R1/R2 into one file? or use some specific parameter?
Thanks,
Ra…
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Hello
I'm testing amptk on some ITS data.
The "amptk illumina" log shows some values like:
#########################################
Merging reads 100%
107030 Pairs
8000 Merged (7.5%…
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I have PacBio CCS, Illumina, and Nanopore reads for the one sample.
It is obvious to me from the docs how to mix 2 of these, but is it possible to mix all three? Or, at the least, can I mix the CC…
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## Bug report
My team keeps receiving "Failed to publish" warnings when running our custom Nextflow pipeline. For example:
```
Jun-17 20:16:08.765 [PublishDir-1982] DEBUG nextflow.processor.Pu…
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Hi,
I have got an error running the test with singularity, as shown below:
```
NXF_OPTS='-Xms1g -Xmx4g'
nextflow run hoelzer-lab/rnaflow -profile test,singularity
```
```
Launching `https:/…
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Hi, I recently ran fastp on an Illumina dataset with the following command:
fastp -i SRR18278237.fastq.gz -o SRR18278237.fastp.gz -z 9 -l 15 -w 16 --dedup --dup_calc_accuracy 6 -x -3 --cut_mean_quali…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Description of the Bug/Issue
I'm working on validating this pipeline on samples sequenced on both Illumina and…