-
Hello,
I don't know if you are accepting suggestions for improvements, but I was wondering if you were perhaps open to implementing [geometric hashing](https://www.biorxiv.org/content/10.1101/2020.…
-
Branching off of #103, a place to discuss ideas, what worked and what didn't work regarding making `sourmash` fast again.
@lgautier's "python all the way notebook": https://github.com/lgautier/mash…
-
Hello!
I have been trying out NanoCLUST for 16S analysis of a few of my data and it has been wonderful so far.
But, a few datasets always abort during read_correction.
Even though I have 47 GB …
-
Nick suggests a tiered approach. Ben will do a survey and see how many classifiers there are and whether it could be done.
-
## Question
Hi Seqan-Team,
I just recently read about XOR Filters and that they were superior to Bloom Filters in regards to memory usage and query time. Do you plan (or maybe already started) t…
-
I've been running canu on a fish genome ~600 MB, and now I keep getting Illegal division by zero... I'm using a linux server and canu snapshot v2.3. Here's my command:
`/data/canu/build/bin/canu…
-
I am trying to run Canu to assemble some nanopore reads. I have attempted some fixes from other threads but I am a little stumped on how to resolve this. Does anyone have any suggestions?
Command:
…
-
Trying to build RUFUS with gcc version
```
[moldach@cedar1 TOOL_TMP_DIR]$ wget https://github.com/jandrewrfarrell/RUFUS/archive/V1.0.tar.gz
--2021-01-29 11:44:34-- https://github.com/jandrewrfa…
-
Hello,
I have an error `Segmentation fault` when I run arriba v2.4.0. I tried to debug with gdb.
Below, you can find all the logs.
```
(gdb) run -x /data/sample.bam -o /data/sample_arriba_st…
-
Hello, I am a BI graduate student in South Korea dealing with ONT long-read sequencing data for the first time.
I am working on a project to align and analyze targeted long-read sqeuencing data, and…