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Rationale: currently characterization of environmental antimicrobial resistance genes is lacking as the potential bacterial pool is too large to sample. Using existing SRA data, if we find a homolog o…
bfjia updated
4 years ago
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Branching from issue #135. On top of AMR genes, scanning for virulence factors present in environmental bacteria would also be interesting.
TODO: virulence factor database needs to be curated to re…
bfjia updated
4 years ago
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Hey guys,
I'm trying to interpret the relevant data from the lgt_di and lgt_codon analysis with comparem
Where can I find the threshold value for Manhattan distance? Or for Deviations from mean?…
ghost updated
4 years ago
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Hello,
I am analyzing RNAseq reads from human tissue samples that were generated from libraries prepared with RNA isolation protocols aiming to acquire both microbial and human RNA.
My first aim…
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Hi Adamallo,
Thanks a lot for your great simulator!
I have a question regarding the loss and duplication rates: you forbid the loss rate to be lower than the duplication rate (https://github.com…
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**French :**
Voici les points qui me semblent importants à connaître et/ou à modifier en ce qui concerne l'évolution de "locallab".
Bien sûr ce qui suit est mon point de vue, fondé sur ma percepti…
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arXiv论文跟踪
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I would really appreciate some help at interpreting the PYANI output.
METHODS:
I am aligning some genomes I sequenced from pure isolates to metagenomic assembled genomes from other studies. I ass…
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Many R-based tools need ultrametric / time-calibrated phylogenies. R also provides several tools to do this. A good use case for metadata reading and writing might be to work out what metadata we mi…
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It is s associated with the nuclear pore, but I don't think it is part of it, or a structural constituent.
Which ref is this?
| TMEM33 | Transmembrane protein 33 | | structural constituent of …