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Hi Chandler,
Are you interested in a pull request to implement an H&E deconvolution and normalization pre-processing based on the work of Macenko et al. ([2009](https://doi.org/10.1109/ISBI.2009.51…
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An improved Reinhard normalization technique was proposed in this paper:
https://ieeexplore.ieee.org/document/9616117
As the original Vahadane implementation is extremely slow compared to the alre…
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[paper](http://wwwx.cs.unc.edu/~mn/sites/default/files/macenko2009.pdf)
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We should have a class called ExpProtocol s.t.
`ExpProtocol([Algo1, Algo2, Algo3], Task, StrategyOfTaskVariantion) `can generate a plot where the x-coordinate is the degree of domain mixture or a c…
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When I execute the "Basic, Fully Automated Run", it throws this error. How can I resolve this issue?
TIA
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First time opening an issue, so I apologize if the approach is not correct.
I was getting an issue with pytorch 1.13, when torch.lstsq in line 52 of macenko.py for torch was replaced recently by to…
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Reinhard color normalization is a commonly used method which is much faster than macenko and vahadane (see [here](https://github.com/andreped/fast-stain-normalization#result)). A drawback is that it i…
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Hello,
I am new to MONAI framework and I am working on stain normalization approach to generate images similar to target image using MONAI framework.
I have checked the blog for the implementation…
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Hi,
I had a question regarding Macenko Stain Normalizer. I see that the H&E Reference matrix is a hard coded matrix of shape (2, 3). Can you shed some light on how did you get this matrix? I am loo…
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Hi,
I am trying to run Macenko and Vahadane stain normalizer on my datasets.
The dataset has separate folders for I am trying to make the list of files, initialize the VahadaneStainNormalizer i…