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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…
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I'm working on a Shiny app which loads a huge meta-transcriptomics dataset (~10 GB) for exploration and analysis, and using FBMs has improved performance markedly. However, the FBMs are generated ever…
yavyx updated
6 months ago
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Similar I guess to issue #78, I'm trying to use sopa to do histocymetry-like protocol with a one-round classic IF tissue staining. I have confocal image with 4 channels, I want to use cellpose with on…
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Hi, I tried your demo agent on my web application and for most interactions it does well. However it seems to have trouble with identifying/clicking on checkboxes. Is there some way to perhaps improve…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FertigLab/dominoSignal
Confirm the following by e…
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Hi, I analyzed the stereo-seq (bin30) data and infered the neuron communication. Evey step seems smoothly, but it yields nothing. Could you please help me?
```
CellChatDB The suggested minimum valu…
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Hello,
I was interested in using your pipeline for a meta-transcriptomics analysis that I'm preparing. However, I do not have any meta-genomic data. I was wondering if I could still use your pipeli…
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**Describe the bug**
I am trying to run cellpose as part of this [Notebook](https://github.com/Moldia/Lee_2023/blob/main/ISS_postprocessing/Notebooks/ISS_postprocessing_Leetal.ipynb). I am running th…
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I am using Netcomi to create a network from meta transcriptomics using raw counts. Before running Netcomi I want to filter my taxa and keep only 100 of them. Can I give as input in netcomi the counts …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FertigLab/domino2
Confirm the following by editin…