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## Problem
In dsl2/eager3 we currently dont allow the combination ```--run_metagenomics --preprocessing_skippairmerging``` because we are not handling paired reads in the metagenomics subworkflow
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We will be adding in a whole suite of features to support a wide variety of downstream data analysis using the outputs of our metagenomics pipeline.
Current planned features:
- [ ] Exploring an…
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I just noticed that when getting the biomes data as the relationship from a sample, it is different from the one from studies.
For instance in studies (https://wwwdev.ebi.ac.uk/metagenomics/api/v1/…
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Hello,
I am trying to download some HMP transcriptomic data, and the links provided in my manifest are giving me some trouble. I have tried downloading from other manifests, such as the example htt…
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[metaviralSPAdes: assembly of viruses from metagenomic data](https://pubmed.ncbi.nlm.nih.gov/32413137/)
> MOTIVATION: Although the set of currently known viruses has been steadily expanding, only a …
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Hello,
I am using ViWrap for analyzing my viral metagenomic data. The tool is amazing and highly appreciate your efforts.
We are encountering an error where vRhyme is unable to make the bins an…
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Potential environmental databases we could pull from. (Linked API page where I could)
- [MGnify (formerly EBI Metagenomics)](https://www.ebi.ac.uk/metagenomics/api/docs/#/)
- [MG-RAST (metagenomic…
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I'm having the following problem when requesting download of certain accession ids for bulk download:
0%| …
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I have some metatranscriptomic data and I want to run it through ARGs-OAP, is this reasonable?
If not, any other suggestions would be greatly appreciated.
Thank you so much for taking the time to re…
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hello developer:
I just used your pipeline. And It is a excellent tool. I have downloaded 10 metagenomic raw sequence reads coming from different deep ocean sediments from NCBI. And i have several qu…