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When calling `make_sample_sheet` to make a katharoseq-competent sheet, using the default `strict=True` parameter leads to an error in `_add_data_to_sheet()`; before the code gets to the the katharo-s…
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**Submitter Name and ORCiD**
[Holly M. Andrews](https://orcid.org/0000-0002-5173-0826)
**Submission ID**
53da7915-3809-48bd-92b9-42a793b92aaa
**Have data already been generated for your study?…
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I'm working on a generalizable pipeline for metagenomics that has bacteria, archaea, eukaryotes, and viruses.
The `download_eggnog_data.py` script asks for taxonomy. Would I download each of these…
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Hello, thanks for your development of this tool! I was curious of your thoughts on using it on meta-omic datasets which comprise genetic information (e.g. metatranscriptomics, gene-level metagenomics)…
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Currently we generate the mapping files for an amplicon run with the `amplicon-pooling.ipynb` notebook, however this should be changed to work the same was as with metagenomics runs. Namely using the …
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We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis.
Here are some ideas we will implement:
- Expand the introduction slide deck to add more overview of the diffe…
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I was hoping to use your model on metagenomics data, but I did'nt want to train it from scratch but rather use the exact same model you generated in your study. I noticed the sharepoint link associate…
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Hello,
First of all - thank you, @mr-c, for the response to my previous problem!
I've been further trying to run emg workflows, specifically emg-pipeline-v4-paired.cwl, on my machine. I have run…
aperz updated
6 years ago
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Hello! Thanks for this interesting tool, I have installed this tools through Miniconda and I just ran 1 metagenomics sample set (paired end fastq) in "metafast_wf" mode in which I have the next messag…
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Hi,
I've been using SPAdes for a while now, and have successfully been able to generate massive co-assemblies using metagenomic data and have never had any major issues, until now. I've been trying t…