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Workspace to provide individuals working on the FoodOn Fermentation ontology to provide an Introduction to themselves, what they perceive as the scope of the Fermentation ontology, what is the purpose…
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There's a new Bioconductor software package for FCM data online that specifically allows ggplot-style plotting specifically for flow cytometry specific data structures. Might be nice to look into?
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I'm classifying representative sequences of quality controlled and clustered 16S reads with command:
java -jar AlignmentTools.jar pairwise-knn query.fq db.fa
The db file is unaligned prokaryotic sub…
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(low priority, this is a concept I encountered recently that seems like it may be of importance, but I have no concrete use cases as this time).
'marine muchilage' appears to be a particular form of …
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [exam…
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Hi Chi,
I have a quick question about how to reorder taxa in the abundance bar plots. I see there is a discussion thread that addresses this issue, but microeco has been updated a couple times sin…
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Cross link to #672
There has been much discussion about a ``microbiome`` class, the latest being in #805.
Resulting from [pco/issues/22](https://github.com/PopulationAndCommunityOntology/pco/iss…
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## Describe your request
Terms in Crawford (1992) should be added to the SFWO and linked to that source. Information in Crawford (1992) can also be used to enrich the SFWO with examples and additiona…
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The diffusion map is a dimensionality reduction technique that uses a transitional probability as its "distance" measure. It is noise-resistant and non-linear. Moreover, the algorithm itself is fast a…
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I have a request for some code. Basically, I want some way to highlight intrapersonal variation through time. I know the within versus between unifrac distances says that variability within an individ…