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Hi, there.
With the help of your open source materials, we fabricated our own board; thanks a lot. I have several questions about software configuration:
1. For the DAQ firmware, should I "#define…
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- [ ] datajoint-elements
- [x] element-lab
- [x] element-animal
- [x] element-session
- [x] element-event
- [ ] element-array-ephys
- [ ] element-calcium-imaging
- [ ] element-miniscope
- [ ] el…
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Across a number of element workflows, we specify an equipment or device table in the pipeline.
- [workflow-calcium-imaging](https://github.com/datajoint/workflow-calcium-imaging/blob/main/workflow_ca…
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## Bug Report
### Description
When inserting into a table with an attribute of the longblob datatype, the following error occurs: `AttributeError: module 'collections' has no attribute 'Mapping'`.…
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Have you thought about extending the package to be able to process 4D data? I understand, that it was created for miniscope data, but I think it could be very useful for 1p-volumetric imaging techniqu…
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I wanted to check the development and testing of suite2p on the 1p dataset. I have many datasets collected using UCLA miniscope and would be more than happy to share the data. For now, `meanImg` and `…
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No matter what I set in the config file, the starting framerate always seems to be 30 Hz for the miniscope.
The top of the imaging window shows ~30 FPS and that's also seems to be the real rate bu…
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Hello @bahanonu ! First off, thank you for creating the calciumImagingAnalysis MATLAB package. We are using your software to process some miniscope calcium imaging data. We are trying to interpret som…
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Having a separate pre-batch notebook file for users who wants to select ROI for every video will be helpful! Especially when imaging is not clean which have dirts on either lens or miniscope. …
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I've tried running the code on my Miniscope imaging video (.avi), the code gets stuck in data_cat.m when trying to use zeros because the VideoReader gets 24 bits per pixel and therefore dtype becomes …