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Hi Sid,
Was just trying to do some exploratory analysis to query RBP binding to some of my 3'UTRs of interest and thought your approach would be a good starting point.
In your [graphic](https://…
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First of all thanks for this fantastic package!
In addition to streme and meme, I was wondering if it is possible to somehow also [Glam2](https://meme-suite.org/meme/tools/glam2)?
I'd imagine this c…
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ghost updated
5 years ago
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Hello. I was wondering if the directory in one of the notebooks "saved_models" could be added to the repository
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Hello, I am trying to provide the jaspar_2020 database to maelstrom as described: https://gimmemotifs.readthedocs.io/en/stable/overview.html#motif-databases.
`gimme maelstrom` seems to run fine I u…
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Hi,
We ran the example dataset with StrA and StrB and then compared the results for case-control to the original reads and it appears the copy number estimate is maybe a little underestimated. Per…
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# Some thoughts about the evaluation of the PFM submitted by applicants
- **PFM**: position frequency matrix
- **PWM**: position weight matrix
See the [benchmarking protocols](https://ibis.auto…
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Hello!
To detect ASD-related tandem repeat loci in my data, I'm refering to Trost et al. (2020). While I run an outlier analysis in EHdn, I have some questions.
1. I knew that depth-normalized c…
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Weronika and I discussed preliminary results and possible conclusions from the quantseq analysis on 16/08/21.
**Objectives from the Quantseq Analysis**
1. Show that the most common isoform length …
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Hi !
I am trying tu use msCENTIPEDE to generate TF footprints for several ATAC-seq data sets i've produced.
I wanted to have general advices on how to achieve the most accurate workflow.
So far, w…