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(I'm going to post a couple of issues, so I just want to add that I really like this app 😊)
### Bug: Changed behaviour of Actor->Motion Settings->Pose Adjustments since 2024.8
Previous post
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building on these notes:
https://github.com/stnava/ANTs/wiki/Reconstruct-DTI-from-DWI-using-mrtrix
does anyone know how to do motion correction and subsequent dti calculation / fiber tracking ba…
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When setting the `caiman_mc` param `gSig_filt` to `2` I encounter the error:
```
File "/app/.snakemake/conda/44dfd8d87e9e83968d3d715818905e45_/lib/python3.8/site-packages/caiman/motion_correction.…
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Dataset consists of multichannel multiframe tiff files.There are n tiff stacks. Each stack has Nimgs where each img is from a depth along the axial plane of the brain, n is the number of channels. Onc…
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Hi guys,
I have been using a code similar to below for motion correction.
```
sequences = [sima.Sequence.create('HDF5', 'filename.hdf5', 'tyx')]
sima.ImagingDataset(sequences, 'filename.sima')
mc_ap…
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from @nataliaorlova :
>Hi Dan and Wayne, I noticed this weird artifact (squares around the cell bodies) in one of the planes on a test Meso2 session (1090674621), looked at the video and it seems to …
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Not sure why, I will look into this ASAP.
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Hi,
I am trying to use caiman to get a initialization file so that I can reuse it in the future. I am passing in a tif file generated from a sequence of avi file, and the error message that i get …
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Thanks for providing this code, it looks super useful! That said, I’m running into issues with software versions being incompatible - would it be possible to provide a containerized version (e.g., Doc…
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Hey, as the document mentioned, some drift-correcting methods like dredge_lfp require preprocessing steps, including resampling. I'm curious about whether I need to resample the motion data back to ma…