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When I apply a high pass spatial filter I can't do motion correction afterwards. The script just hangs during motion correction without providing any feedback, error or progress bar. When I substitute…
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Hello!
With the documentation still down, I have a few questions regarding implementing DeepMReye on some data. I've looked through the paper a bit as well, but just need some more clarification.
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building on these notes:
https://github.com/stnava/ANTs/wiki/Reconstruct-DTI-from-DWI-using-mrtrix
does anyone know how to do motion correction and subsequent dti calculation / fiber tracking ba…
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Hi, I'm testing spikeinterface on concatenating chronic NPX 1.0 recordings on at least two days and then spike sort.
I'm trying to use the non-rigid method motion correction which has been running …
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## Description
The motion correction is bad for 2 subjects:
* `sub-CR008_ses-baselinespinalcord` : 360 flip
the mask is Okay for the ref image but there is a lot of motion, so not all slice…
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Dataset consists of multichannel multiframe tiff files.There are n tiff stacks. Each stack has Nimgs where each img is from a depth along the axial plane of the brain, n is the number of channels. Onc…
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Hi guys,
I have been using a code similar to below for motion correction.
```
sequences = [sima.Sequence.create('HDF5', 'filename.hdf5', 'tyx')]
sima.ImagingDataset(sequences, 'filename.sima')
mc_ap…
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from @nataliaorlova :
>Hi Dan and Wayne, I noticed this weird artifact (squares around the cell bodies) in one of the planes on a test Meso2 session (1090674621), looked at the video and it seems to …
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1.(HMMR) Learning 3d human dynamics from video(2019)
temporal encoder: **1D temporal** convolutional layers, **precompute** the image features on each frame, get current and ±∆t frames prediction.
c…
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Hi all,
I am new to minian and I want to set a mask for the motion correction. When I click on the 'Box Edit Tool' in the viewer it immediately freezes and does not allow me to update a mask or cha…