-
Hello, we've been trying to use dr-prg to our research but somehow after installing the program with docker and singularity separately, the index subcommand is not there.. Do you have any idea what we…
-
Hi Dr. Nicholas Croucher,
I have a question to consult you about the use of Gubbins.
In a recent article I submitted, a reviewer questioned the appropriateness of using Gubbins to construct a ph…
-
Would anyone find it useful for BridgeDb to support the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy) for identifying organisms? Some time ago, I mapped each of our supported organisms to its…
-
To make testing easier and quicker, we should find a minimal dataset, and run most, if not all, functionalities from `metadata` to `curate` with it. Ideally,
- small file size of .sra: some bacterial…
-
This is a fringe issue that I ran into when running TB-profiler through a conda installation that is shared by multiple users.
I just want to write it down for posterity, so that the error message ca…
-
i installed UVP and Run.Then it terminates just after printing the following
Validating Input file.
Running Kraken.
It doesn't give any kind of error message.It just quit
![uvp](https://user-imag…
-
Looking at the Bracken source code, I see that counts do get down to the level of individual genomes. But this level of count data is not reported to the user.
Seems like it wouldn't be that much a…
-
i have some medical questions and answer dataset and i want to train it by your model. please guide me how to do that...
ghost updated
4 years ago
-
Hi Tod,
I've been trying the nanopore support of vSNP3 and I think it still needs to be optimized.
First, when installing vSNP3 with conda, it lacks 2 dependencies: vcftools and bcftools. To ge…
-
Hi,
Would it be possible to get an output that is similar to blastp default output? I am running another program that parses the blastp default output to get top hits.
Here is the example of blast…