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Both already handed within code, just set encodingFormat correctly
- [x] main.nf -> #10
- [x] nextflow.config -> #10
And yaml files
versions.yml -> #2
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Ranked by time/complexity:
1. Batch script for running lots of APSIM simulations
2. Combining multiple SQLite databases into one
3. How to create large number of config files? (unsure on how to t…
JBris updated
3 months ago
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### Description of the bug
Hi,
I want to ask why I use latesest version, but my results is still macs2, not macs3.
Here is my command line:
```
nextflow run nf-core/atacseq -resume -c nextflow.conf…
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## Summary
Provide a new Nextflow package distribution that runs natively in the target execution environment ie. deb and rpm on Linux and dmg on MacOs.
## Goals
* Provide a self-contained ap…
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### Description of the bug
Hi @GallVp ,
The assemblyQC pipeline failed on a set of transcriptome assemblies. The .nextflow.log ended with _DEBUG nextflow.script.ScriptRunner - > Execution complet…
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### Description
If inputs are missing for the process `FOODME2:REPORTING:HELPER_SAMPLE_REPORT` then piepline fails with following error messsage:
```
WARN: Input tuple does not match tuple declar…
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Discussed with Ala about repeated resuming happened in https://github.com/EBISPOT/goci/issues/1383. We agreed to make the following changes.
- Wait for 1h before every resume attempt (so that the …
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### Describe the bug
I'm using `nextflow`, as packaged in https://github.com/NixOS/nixpkgs/pull/339197/, from the current unstable channel. This new packaging of nextflow has a patch to make sure the…
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In quantms, for simple experiments, I would like to allow using SDRF only to specify the experimental design (incl. channels, replicates, fractions), not mass spec. related settings (and use nextflow …
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This is the validation dataset.
```
Execution cancelled -- Finishing pending tasks before exit
-[nf-core/pathogensurveillance] Pipeline completed with errors-
ERROR ~ Error executing process > 'PATH…