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### Bug summary
just a list of comments
### Bug details
General questions for study creation:
it looks like we must select an environmental template - what of studies that require more than one sa…
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sync WDL file with the one used by NMDC, update templates and web interface to accommodate new input files from the NMDC WDL.
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Based on a failure @Michal-Babins sent this week, we need error checking on operations that copy cromwell files from perlmutter scratch to cfs. The next workflow execution activity record should not …
aclum updated
3 weeks ago
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While working on https://github.com/microbiomedata/issues/issues/612, I noticed that many samples are missing values for `depth` , even in sample types where it is required.
I'm guessing this is c…
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**Is your feature request related to a problem? Please describe.**
When user's workflows fail it would be helpful to display Cromwell output files to help understand where the error occurred
**Des…
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**Is your feature request related to a problem? Please describe.**
We need to switch to v1.0 for our WDL's to match what's used for the NMDC
**Describe the solution you'd like**
Convert each of t…
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I believe the runtime code is currently loading `nmdc.schema.json`, this does not have the regular expression patterns we need, those are in `nmdc_materialized_patterns.schema.json` which is also part…
aclum updated
1 month ago
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In my local clone of the `berkeley-schema-fy24` repo, when I run `$ make squeaky-clean all`, the console output begins with an error message:
```console
$ make squeaky-clean all
Error: open local…
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OAK output for each environmental triad term & the soil query will go into google sheets
- 1 sheet for each environment (soil)
Tabs
- read me
- 3 separate tabs for environmental triad slots
- Colum…
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We need to get to the bottom of what I believe are related issues. In both cases the range in linkml is specified with any_of but Jing's code, which i believe is using the schema.json, complains about…
aclum updated
1 month ago