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This does not pertain to the patterns but to the release workflows of each pheno ontology.
Assuming that we have a shared release workflow where a basic obo file is available, as well as a complete…
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Currently we convert obo to json using the java obographs library (via an owltools wrapper), which creates as odd dependency
The overall goal is stop consuming obo, but in the interim, let's swap i…
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Hi,
I am wondering if glitter can be used to build queries
1. that specify the dataset to be used for matching using the FROM and FROM NAMED clauses
2. that use the GRAPH keyword to match patt…
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One nice aspect of pronto is that it seems able to read most ontologies using a consistent API, even though ontologies don't always follow the same standards. As seen in [these docs](https://github.co…
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We should include shapes for the model itself.
I think we should make all assumptions explicit. E.g. should every model have a title? a status?
Should we have separate shapes for a curated model…
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Is there a good reason this shouldn't simply be [rdfs:isDefinedBy](https://www.w3.org/TR/rdf-schema/#ch_isdefinedby), or at least allow that to comply with the requirement?
The definition for `rdfs…
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Given this ontology (ont.owl):
```
Prefix(:=)
Prefix(owl:=)
Ontology(
EquivalentClasses( ObjectUnionOf( ))
)
```
running
```
robot relax --input ont.owl remove --axioms equivalen…
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There's a huge amount of prior effort in normalizing identifiers built in to the bioregistry, including support for "preferred prefixes" which include opinionated stylization. Can you help me better u…
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Seems @manulera came up with https://github.com/manulera/ontology_viewer which looks like its doing a subset of obographviz, outputting pretty github embeddable mermaid graphics:
https://github.co…
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Nano- and [micropublications](http://dx.doi.org/10.1186/2041-1480-5-28) require multiple named graphs, which is not currently supported.
See https://gist.github.com/stain/df47152577bde104b4bd#file-mi…
stain updated
9 years ago