-
```
import numpy as np
from xtiff import to_tiff
def test_to_tiff(tmp_path):
path = tmp_path + "test.ome.tiff"
num_channels = 10
img = np.zeros((1, 1, num_channels, 200, 200, 1))
…
-
Issue was raised on imagesc thread: https://forum.image.sc/t/different-custom-metadata-parsing-bioformat-using-fiji-knime-command-line/51704
A sample file has been provided but can also be easily r…
-
We should start by providing a function to calculate G, S and DC images.
If we don't want to load raw data to the viewer, I think we can do this in a couple ways:
- Write a reader function (check …
-
Following manual review on 2021-11-03, the following files are missing either thumbnail or story.
## Vanderbilt HE missing both thumbnail and story
- [ ] Generated
- [ ] In assets bucket
- [ ] …
-
It seems to be working and reading the metadata, but it's throwing out:
`Key not found: list index out of range
Key not found: list index out of range
key not found list index out of range
Key not…
-
Dear Chandler,
thank you for you response and cant wait for the new update. I have the problem that when I run a code to batch register and merge slides after it finishes with lets say Slide 1 it d…
-
It would be handy to pass a metadata argument (individual dictionary or even ome xml) when creating the metadata with tifffile in the pyramid or list writer.
Basically to name each channel with the…
-
Moving issue from https://github.com/brainglobe/cellfinder/issues/184
Imio should read more types with an option to return a dask array rather than numpy.
Some ideas include:
- [x] Path to dire…
-
* wsireg version: 0.3.8
* Python version: 3.10.13
* Operating System: Windows
### Description
When trying to register 3 imaging modalities i want the output resolution to be 1 micron. I state …
-
Sorry for the continuous questions, and I'm really at the beginning stage of spatial transcriptomics.
I aligned my confocal image (Z-stack OME TIFF file) with the Xenium dataset in Xenium Explorer.…