brainglobe brainglobe-utils issues

brainglobe / brainglobe-utils

Shared general purpose tools for the BrainGlobe project

MIT License

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issues

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wip: sample data works, but doesn't reproduce error

#99 alessandrofelder opened 1 week ago
0
improve read_with_dask docs, ignore OME metadata

#98 alessandrofelder closed 6 days ago
1
Conform to new linting rules

#97 IgorTatarnikov closed 2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#96 pre-commit-ci[bot] closed 2 weeks ago
0
Export cells to brainrender from brainmapper widget

#95 adamltyson closed 2 weeks ago
1
Add an "Export to brainrender" button to the `brainmapper` widget

#94 adamltyson closed 2 weeks ago
0
handle nii.gz correctly

#93 alessandrofelder closed 2 weeks ago
1
[Feature] make caching work as expected on CI

#92 alessandrofelder opened 3 weeks ago
0
Update CI

#91 adamltyson closed 3 weeks ago
1
DO NOT MERGE - testing CI

#90 adamltyson closed 4 weeks ago
0
[BUG] `load_any` raises `NotImplementedError` for `.nii.gz` file

#89 alessandrofelder closed 2 weeks ago
0
Add transform widget

#88 adamltyson closed 3 weeks ago
1
Standardise contact information in readme

#87 adamltyson closed 1 month ago
1
[pre-commit.ci] pre-commit autoupdate

#86 pre-commit-ci[bot] closed 1 month ago
1
Numpy 2.0 compliance

#85 IgorTatarnikov closed 1 month ago
1
Provide optional dependencies for qt instead of napari

#84 niksirbi closed 1 month ago
1
Remove nrrd IO

#82 adamltyson closed 2 months ago
1
Update supported python versions

#81 adamltyson closed 2 months ago
3
[pre-commit.ci] pre-commit autoupdate

#80 pre-commit-ci[bot] closed 2 months ago
1
[BUG] read_with_dask fails for folder containing .ome.tif files

#79 niksirbi closed 6 days ago
0
Changed collapsed icon for CollapsibleWidget

#78 IgorTatarnikov closed 2 months ago
1
[Feature] compare/replace cell matching code with `scipy.optimize` implementation

#77 alessandrofelder closed 2 months ago
5
[Feature] Negative tests for cell matching

#76 alessandrofelder opened 3 months ago
0
Be permissive about tiff axis metadata

#75 alessandrofelder closed 3 months ago
1
Add cell matching support

#74 matham closed 2 months ago
18
Add image IO loading code from cellfinder & create image IO submodule within IO

#73 adamltyson closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#72 pre-commit-ci[bot] closed 3 months ago
1
Run CI on both types of Mac

#71 alessandrofelder closed 3 months ago
1
Expand header_widget to include doc path, citation and help text

#70 K-Meech closed 4 months ago
3
Move `image_io` into `IO`?

#69 adamltyson closed 3 months ago
0
Update Pathlib usage and docstrings

#68 willGraham01 closed 4 months ago
4
Support single z-stack tif file for input

#67 matham closed 3 months ago
22
Convert remaining docstrings to numpydoc style

#66 K-Meech closed 4 months ago
1
Add docstrings and expand tests for IO sub-module

#65 K-Meech closed 4 months ago
3
Add tests for qtpy sub-module

#64 K-Meech closed 4 months ago
1
Create tests for qtpy sub-module

#63 K-Meech closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#62 pre-commit-ci[bot] closed 4 months ago
1
Add tests for cells sub-module

#61 K-Meech closed 4 months ago
2
[BUG] Cell < comparison

#60 K-Meech closed 4 months ago
4
Refactor ImageIOLoadException

#59 K-Meech closed 5 months ago
1
Use data path and fixtures consistently

#58 K-Meech closed 5 months ago
2
Create tests for cells sub-module

#57 K-Meech closed 4 months ago
0
[Feature] Add validation for numpydoc

#56 K-Meech opened 5 months ago
0
Use codecov token in test_and_deploy

#55 K-Meech closed 5 months ago
2
Handle str and pathlib.Path consistently in image_io

#54 K-Meech closed 5 months ago
0
Convert general submodule docstrings to numpydoc

#53 K-Meech closed 5 months ago
0
Add tests for brainmapper sub-module

#52 K-Meech closed 5 months ago
0
Add save_any function to image_io

#51 K-Meech closed 5 months ago
0
Add a save_any function to image_io

#50 K-Meech closed 5 months ago
5
Create tests for brainmapper sub-module

#49 K-Meech closed 5 months ago
3