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Segmenting multiple cores together increases variability and results in poor registrations. Need to tune segmentation and core selection parameters to only grab one core.
Suggest playing with gaus…
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**Describe the bug**
I have some images of samples which have a large variation in height. The molecule has some sections at 2-3nm and others at 10-15nm. Therefore when flattening with TopoStats, str…
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Aim: when working with tissue data often large parts of an acquired image constitute background which is not relevant for later processing. These regions should be masked from the input to limit the a…
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## Checklist
Please try and tick off each of these items when filing the bug report. There are further instructions on each below.
* [x] Re-run analysis with `run_topostats --core 1`.
* [x] Des…
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**Is your feature request related to a problem? Please describe.**
Aid usability by splitting 'basic' functional settings and 'advanced' parameters.
**Describe the solution you'd like**
Here is…
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We need to write a short document about all functions in init.py which have the decorator @register_function. For each function we need a bullet poinnt with a short sentence and below a single line of…
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Hi I can launch napari but not the chatgpt plugin
I get the following error message:
|-> OmegaQWidget instantiated!
|\ Segmentation function signatures:
|| # Classic segmentation is a simple t…
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## Bio-Image Analysis Support Request
### Image Upload
📎 **Drag & drop your microscopy image here** (JPG, PNG, GIF, 512x512 or 1024x1024, 2D only).
![membrane2d](https://github.com/user-attachm…
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`imglyb` does not support converting `bool` type images to numpy. This means that users are unable to convert masks/thresholded images into python numpy/xarray objects.
Here is a minimal example:
…
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### Environment
* **Tesseract Version**: 4.1.1 and latest master
* **Platform**: `Linux gentoo-x230 5.6.18-grsec #2 SMP Tue Jul 7 18:17:17 CEST 2020 x86_64 Intel(R) Core(TM) i5-3320M CPU @ 2.60GHz…