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Feedback from user looking for information on PCR genotyping. Asked for primary sequencies, PCR conditions and confirmation on whehter sequencing had been done as part of validation prior to phenotypi…
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Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
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When using either control_Ct_barplot_sample or control_Ct_barplot_gene the function returns an error and discovers no unreliable samples when the maxCt variable is set to 40 or greater. When set to 39…
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**Is your feature request related to a problem? Please describe.**
As `poly` grows, more and more types will be shared between nominally unrelated packages.
For example, many packages will deal w…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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Hi, Soren,
Thank you for developing the tool. It is easy to install and I can run your test dataset successfully.
However, when I run my own fastq file with the corresponding f/F/r/R sequences, I …
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### Description
Está faltando uma vírgula no último banco da listagem após "Url": null
segue evidencia:
{
"COMPE": "757",
"ISPB": "02318507",
"Document": "02.318.507/0001-13",
…
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In the attached results, there are several assemblies in the Heteroplasmy_assemblies_project.fasta file that do not contain the heteroplasmic position. The VCF file indicates that there is a SNP, but …
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Please read that and implement it in quality-control.py. Basically we should use trim_galore as the main tool for quality control. In this script the input is fastq files and outputs are validated fas…
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Samples are in -20 behind @kubu4 bench...
Only bag with tube boxes.
Samples are in RNAlater.
Specific samples to extract
| ----- |
| FA 066 |
| FA 067 |
| FA 068 |
| FA 069 |
| …
sr320 updated
1 month ago