-
There's going to be an awful lot of detail in the "Analysing trees" tutorial about fundamental operations like tree traversal. I wonder if we should hive that off into its own tutorial and reorganise …
-
In order to improve the informativeness of the TaxI3 output, one important additional features would be the support for phylogenetic trees in order to identify among the different species the direct s…
-
Hi,
I am looking for a function to read phylogenetic trees from xml file, something similar to following python implementation:
```python
from Bio import Phylo
# download this from http://www.ph…
-
The "supporting studies" feature is going to be confusing for users.
1. (Arlin) Put an explanation in the Help-FAQ view.
1. Make a float-over for the "Supporting studies" header that says "Publish…
arlin updated
6 years ago
-
## Background
fn4 is a relatedness monitoring system which stores SNV distances between reference-mapped sequences.
It also has sample clustering functionality. It would be desirable to have …
-
Large phylogenetic trees with hundreds or even thousands of nodes are impractical to view, and those who need them in their research have limited options for manipulating trees of this size. The colla…
-
Hi
I want to compare two phylogenetic trees topologies using dendroscope. In the user-manual, the "Algorithms" option is used for topologies comparison. however, there is no details how to do this…
-
Hi!
I would like to generate a network from a distance matrix. However, I noticed that the Phylogeny view is enabled and a phylogenetic tree is inferred, despite MicrobeTrace manual states "**Some of…
-
If things are nontrivial, move them from here into their own issue. This is not a complete list from any of these packages, but things that jumped out as being needed. More to add probably. Some of…
-
Hi,
I am looking for a function to read phylogenetic trees from xml file, something similar to following python implementation:
```python
from Bio import Phylo
# download this from http://www.phyl…