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Hi, I’m encountering errors while running pvactools (version 4.4.1) on a SLURM-managed HPC cluster. The pipeline fails during MHC Class I predictions, specifically with NetMHCcons and MHCflurry. Below…
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**Describe the bug**
Data Prepper Expression string where the first character is `/` are evaluated as escaped Json Pointer.
**To Reproduce**
Steps to reproduce the behavior:
Using the followin…
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**Describe the bug**
add roles and users to opensearch
```yaml
"log_collector_prepper" : {
"reserved" : false,
"hidden" : false,
"cluster_permissions" : [
"cluster_monitor"
…
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**User story**
As a user of the scRNA Core cDNA Prep pipeline, I would like some changes to the pooling algorithm (allocating samples into wells on the LRC PBMC plate) to increase the flexibility and…
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**What do you want to do?**
- [x] Request a change to existing documentation
- [ ] Add new documentation
- [ ] Report a technical problem with the documentation
- [ ] Other
**Tell us about …
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### Description of feature
I have WGS data generated with a library prep that includes UMIs ([Claret Biosciences SRSLY for FFPE](https://www.claretbio.com/products/kits).
The current pipeline code d…
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When trying to do a, as indicated in the docstring with '='
```
kedro vertexai run-once --image test:latest --pipeline default --param date_param=20240800
```
i always end up with this value error…
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Thanks for your excellent work!
However, an error occurs when I run the instructions for preparing the NuScenesSSL dataset. Upon investigation, I found that this might be due to the 'pipeline' parame…
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**Is your feature request related to a problem? Please describe.**
The default behavior of Data Prepper core is to only shut down when no sub-pipelines are valid. This can lead to a confusing user ex…
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Before we can publish the new Data Prepper documentation section and make the repo public, we need to complete the following tasks. Each task is separated by the team responsible for each item.
**R…