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Prokka seems to have a contig name length limit.
There should be a warning or rather a lock to not start if the limit could be exceeded if our tags are added.
```
Contig ID must
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bên mình báo các package incompatible ,và package nào có số phía sau là báo "does not exits". Nhờ bạn giúp dùm. Thân
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I'm trying to run snippy-multi for a few assembled genomes.
I've generated a tab file (input.tab) as follows:
isolate12 /msa/12_PROKKA_06152021.fna
isolate2 /msa/2_PROKKA_06162021.fna
isolate2…
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I would like BACTpipe to detect if `signalp` is missing if `prokka_gram` is set to true, and warn the user that prokka requires signalp if combined with the `prokka_gram` option and perhaps instruct t…
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`docker run --entrypoint /bin/ls sjackman/prokka -lash /home`
Gives me:
```
4.0K drwxr-xr-x 11 root root 4.0K Nov 13 14:37 .
4.0K drwxr-xr-x 68 root root 4.0K Jan 29 19:51 ..
4.0K drwxr-xr-x 20 root…
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Am trying this, first attempt with a personal training set looks good, although I personally like the way I can control annotation with Prokka, but this is more convenient. But straight away a questio…
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I'm getting the complaint:
```
[00:57:44] Contig ID must
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The build time of the Prokka version 1.13.4--pl526_0 at Biocontainers is 2018-08-23.
Prokka uses tbl2asn internally, but as reported in [this issue](https://github.com/tseemann/prokka/issues/139), th…
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Hi, ursky.
At first, I thought it was prokka's Perl module [problem,](https://github.com/tseemann/prokka/issues/446) because prokka will give this error when I type "prokka --help", then I use con…
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Whenever I try to select Prokka as a tool for finding ORFs, MetAMOS uses FragGeneScan. After reviewing the code of `runPipeline`, `findorfs.py` and `findscforfs.py` I found out that prokka is not on t…