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metagenomics
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metagenomics-tk
GNU Affero General Public License v3.0
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feat(config): provide function to dynamically assign resources based on number of attempts
#380
pbelmann
closed
1 week ago
0
Feature/nextflow schema
#379
pbelmann
closed
2 weeks ago
0
Feat/split porechop
#378
pbelmann
closed
1 week ago
0
fix(magAttributes): create checkm2 database dir only when necessary
#377
pbelmann
closed
2 weeks ago
0
Fix/output owner permissions
#376
pbelmann
closed
3 weeks ago
0
Porechop Improvements
#375
pbelmann
opened
1 month ago
0
feat(docker): use host network instead of docker bridge
#374
pbelmann
closed
1 month ago
0
Feature/allow nextflow run usage
#373
pbelmann
closed
1 month ago
0
Toolkit usage
#372
pbelmann
opened
1 month ago
0
Concept
#371
pbelmann
opened
1 month ago
0
important change
#370
dweinholz
closed
1 month ago
0
Update .gitignore
#369
pbelmann
closed
1 month ago
0
Feature/GitHub pages
#368
pbelmann
closed
1 month ago
0
Create LICENSE
#367
pbelmann
closed
1 month ago
0
fix(annotation): mmseqs taxonomy should consider container ram limit
#366
pbelmann
closed
1 month ago
0
fix(config): consider partial genes in mmseqs
#365
pbelmann
closed
1 month ago
1
doc(clowm): adjust clowm readme
#364
pbelmann
closed
2 months ago
0
Metaspades fails with > 1 TB RAM because of task.memory format
#363
nkleinbo
opened
4 months ago
0
fix(magAttribute): checkm2 should use scratch directory if possible
#362
pbelmann
closed
4 months ago
0
Fix ont coverm
#361
pbelmann
closed
5 months ago
0
feat(qc): add filter for human DNA
#360
pbelmann
closed
4 months ago
0
feat(aggregation): add rpkm and tpm matrix
#359
pbelmann
closed
6 months ago
0
fix(magAttributes): replace wget with newer static binary
#358
pbelmann
closed
6 months ago
0
Fix/gtdb
#357
pbelmann
closed
6 months ago
0
Prokka Partial Genes
#356
pbelmann
opened
7 months ago
0
Improve pCollectFile implementation
#355
pbelmann
opened
7 months ago
0
feat(tests): production tests now also include an emgb import
#354
pbelmann
closed
8 months ago
0
Check Empty Parameter Inputs
#353
pbelmann
opened
8 months ago
0
fix(annotation): do not wait for unclassified gtdb results for prokka input
#352
pbelmann
closed
8 months ago
0
feat(metabolomics): carveme independent of cplex
#351
pbelmann
closed
9 months ago
0
fix(assembler): do not skip flavor
#350
pbelmann
closed
9 months ago
0
feat(magAttributes): use chunk index instead of random id
#349
pbelmann
closed
9 months ago
0
Feature/mmseqs speedup
#348
pbelmann
closed
9 months ago
0
Fix/emgb export
#347
pbelmann
closed
10 months ago
0
Feature/checkm2
#346
pbelmann
closed
9 months ago
0
feat(pipeline): initial implementation for easy/preset pipeline execution mode added
#345
pbelmann
closed
10 months ago
0
fix(configuration): create db directory only if db parameter provided
#344
pbelmann
closed
10 months ago
0
Feature/nf secrets
#343
pbelmann
closed
10 months ago
0
fix(cplex): use quay.io image
#342
pbelmann
closed
1 year ago
0
fix(annotation): reduce sensitivity when running tests
#341
pbelmann
closed
1 year ago
0
Fix GapSeq Tests
#340
pbelmann
opened
1 year ago
0
feat(emgb): add tests to ensure that the export does not break
#339
pbelmann
closed
1 year ago
0
Improve EMGB compatibility
#338
pbelmann
opened
1 year ago
0
Fix/improved fullpipeline scaling
#337
pbelmann
closed
1 year ago
0
fix(binning): metabinner should exit gracefully if not bins could be formed
#336
pbelmann
opened
1 year ago
0
Enable Binning Refinement for Production
#335
pbelmann
opened
1 year ago
0
fix(binning): do not run prodigal and hmmsearch if not necessary
#334
pbelmann
closed
1 year ago
0
Fix magscot edge case
#333
pbelmann
opened
1 year ago
0
Fix/speedup databases
#332
pbelmann
closed
1 year ago
0
Fix/speedup fragment recruitment
#331
pbelmann
closed
1 year ago
0
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