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Pushing scRNAseq data queries live: Can we do it this week?
* Data live in DB
* [x] pdb-dev has all data (aim to use this for first release of queries)
* [x] pdb-ug loading latest (the …
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Thank you so much for creating this tool for deconvolution without scRNAseq data.
I am working with an extremely rare pediatric tumor where the samples are few and far between and there are basica…
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Hi,
I am trying to use doubletFinder package on my scRNAseq data that was obtained after super loading i.e. assumed higher % of doublets. In the package description and real data example the "% doubl…
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Hello,
I am new to scRNAseq data, so please forgive my ignorance..
I was wondering how I should deal with controls when using CaSpER
.
I understand that a bulk RNAseq sample would have a match…
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Experiment: Single Cell RNAseq from 10x genomics
File Format: I have 2 Lanes (L001 and L002) and I also have for each of the lanes an R1 and R2 file
Reference Genome: Multiple HIV proviral sequences…
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Hi there,
Thanks for the package.
I obtained a very high % of unspliced reads (65%) in the samples of human tonsils.
Do you know if this high % is technical error of the sample or the way …
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Dear developers,
I have a question regarding computing niche cell type composition from following tutorial.
[https://scenvi.readthedocs.io/en/latest/tutorial/MOp_MERFISH_tutorial.html](tut)
I…
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Hi,
I have some scRNAseq data that I ran through the scUTRquant pipeline and would like to now calculate the LUI for the transcripts. Is there a pipeline or some code from the authors I might be ab…
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### Description of feature
I'm following up on a slack post that I put out 2 months ago at https://nfcore.slack.com/archives/CHN5BV5DW/p1712178056321859
I had a question about the fastq format nee…
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Hi,
I had a bit of issue with the jeckyl build of the scRNASeq howto workflow with the latest version of the elixar theme (v2.5)
(see mess here: https://github.com/swbioinf/scrnaseq_howto_ga_workf…