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## Goal: Learn how to use phastcons for scoring conservation.
Conservation is basically a score that estimates how similar the sequences are. Phastcons was the only package that incorporated a tree…
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## EUKulele Fails on "Performing taxonomic visualization steps..."
Running EUKulele on the HPC results in a failed run, likely at the taxonomic estimation step. Here is the tail of the batch run ou…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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## BLAST search
Let's introduce **BLAST** search feature support.
**Displaying BLAST search results for *read*/*feature* sequence**:
- User clicks on *read* (or any other feature) and selects *…
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### Environment
- **Qiskit Terra version**: 0.24.1
- **Python version**: 3.9
- **Operating system**: MacOs
### What is happening?
When I try and use the `timing_constraints` kwarg (incorrectly…
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AliTV has Excellent interactive visualization capabilities. However, I am not sure how to generate the .yml file. It would be great if I could just upload my gff files to show the annotations.
For la…
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First time using this package. I have run an alignment with linclust and am wondering if there is a way of extracting the positional information of the clusters and the distance between them, with the…
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Hi,
Thanks for the nice tool. When I try to run this command:
```
MarkerMAG link -p test -marker reconstructed_16.fa -mag MAGs -x fa -r1 ETHSEQ0000005220.1.fq -r2 ETHSEQ0000005220.2.fq -t 8 -o ou…
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Hi there
since apparently our other .bam file seems to contain only unpaired reads (#27), we now started with a .bam file produced by a different processing pipeline from our NGS data.
Now we ge…
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Dear Garvita, thanks for your amazing work.
I am trying to use ClothSeq, but find the SMPL fitting not that aligned to the scan, the foot and the hands in particular:
Is this abnormal? I am u…