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Hi, I have been testing the tool over the last weeks, as I am interesting in the integration of scRNAseq data with spatial datasets (proteomics and image-based transcriptomics, such as Cosmx). I could…
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Love the new front page. I thought I should check the enrichment tool again.
I tried an enrichment with the complete set of 456 fission proteins annotated to "mitotic cell cycle"
This was the r…
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Hello
Thank you for this package, it seems wonderful... but I get an error:
I am working on embryos. I cut them in two parts (ICM, wich will become the fetus and TE, which will produce placenta)…
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I notice that neighbourhood groups will make groups of different cell types if cell types are similar. Might Milo accept some per-cell labelling from a method such as SingleR to set up a boundary not …
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Can replicate with `example-data` on `v3.3.4-master240424`
By default, clusters 1-3 are assinged as follows:
![clustersamples-splitmap-pltmod-2](https://github.com/user-attachments/assets/49dca652…
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@pli888 Focus the proposal on metabolic imaging?
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Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?
![image](https://user-images.githubusercontent.com/…
ervau updated
2 years ago
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https://mp.weixin.qq.com/s/oM7OdSyhwMa9hjYkHImxYQ
ixxmu updated
2 weeks ago
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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# Design
## Additions
For Assay
MUST Use
mCT-seq [EFO:0030060]
"cell" or "nucleus"
MERFISH [EFO:0008992]
"na"
…