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### What happened?
Running the full workflow, it has become apparent that the rule `create_controlled_road_transport_annual_demand_and_installed_capacities` misses data from some countries. This cr…
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**Snakemake version** 6.3.0
**Describe the bug**
Snakemake is called by `spacemake run` (link: https://spacemake.readthedocs.io/en/latest/index.html).
Upon attempting to run I get the er…
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I tried to run
https://github.com/PyPSA/pypsa-eur/blob/master/scripts/prepare_sector_network.py
as python script to debug and learn about it.
I got an error due to non-existing config file
…
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### Description of bug
Spades-hammer is terminating because of a segmentation fault while kmer-counting and reports an "OS return value: 1".
Command line:
```
/lisc/scratch/jmf/internal/Analyse…
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Hey there! I'm trying to migrate my SLURM workflow to snakemake 8 and I think this is the new standard way.
There are only `pip` instructions on the [instruction page](https://snakemake.github.io/s…
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### Command description
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language.
##…
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Work coming from the BGE hackathon in Leiden. Reporting of products made should go in the report here: https://docs.google.com/document/d/1if6ukMKN3xHQHAwGEQPhhgvp7iQcFnauj4W1ZtIs8wk/edit
Aim is to…
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Dear Oskar,
Due to no config/config.init.yaml via **mamba installation
mamba create -n binny_env
mamba activate binny_env
mamba create --prefix binny bioconda::binny
mamba deactivate**
So, I…
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**Snakemake version**
8.11.3
**Describe the bug**
snakemake --archive filename.tar.gz, returns error
```
WorkflowError:
Unsupported archive format (supported: .tar, .tar.gz, .tar.bz2, .ta…
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Hello,
I am trying to work through the pipeline, but it appears to be getting stuck somewhere during VSEARCH. I ran the following code and got this message:
snakemake --jobs 20 --snakefile snake…