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### Hi author, i have some issues, could you help me to resovle?
the system is window10 and i run the installation protocal from the github page using anaconda.
when i run the mcorr_cnmf.ipynb,…
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### Issue with current documentation:
The settings that appear in the suite2p GUI are not explained in the [documentation](https://suite2p.readthedocs.io/en/latest/settings.html).
Settings in the…
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I am imaging gcamp6f in cultured tumor cells (one-photon epifluorescence), and my raw images are 1536x2048 16-bit TIF files. I imported the images as a virtual stack into Fiji, auto-adjusted brightnes…
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Hi,
I ran yass today on my dataset (64 channels for about 30min), and came across an error:
```
yass.postprocess.run@post_process 06/10/2020 15:08:26 INFO 11 units after removing duplicate unit…
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Thank you very much for your work. I’m a beginner in calcium imaging analysis.
I'm recording in awake mice using GCaMP6f. The "tau" value is set to 0.7 as you recomend in your wiki. But the decon…
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Hello!
I have been trying to run Suite2p v10.3 with the anatomical mode on. However I end up getting the following error for every run-
----------- ROI DETECTION
Binning movie in chunks of lengt…
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I tried one suggestion, setting environment variable `MKL_DEBUG_CPU_TYPE=5`, but this did not help. We may want to have a different environment for AMD and allow for numpy fft to be used in that envir…
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Hello!
The modeling of the mRNA bias is a unique feature of SimBu, so it has to be very robust.
Thus, before writing the paper, I think we should spend some time to review a bit the literature r…
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Hi all,
I spent the last days generating some results for the simulation. I used only quantiseq for deconvolution of the simulated datasets and for now mainly focused on the effect of scaling facto…
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This will be about the effect of the bias on deconvolution.
|main text a|main text b|supplementary 4a|supplementary 4b|supplementary 4c|supplementary 4d|
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|![image](https://user-imag…