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Hi, I’m just starting out in this field.
We have an scRNA-seq dataset that includes 438 million paired-end reads (2x150bp) from approximately 8000 cells sourced from tissue samples. We processed the …
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#### What data file(s) does this issue pertain to?
`independent-specimens.wgswxspanel.primary-plus.prefer.wgs.tsv`
#### What release are you using?
v15
#### Put your question or report y…
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Hi, just looking for some advice -
I am looking at processing tumor-only PDX samples from targeted sequencing. I noticed this workflow on Cavatica and you mention using the Xenome tool for filteri…
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Hi, I'm a new to cnvkit. Thanks for this excellent tool. As it was pointed out in the documentation, CNVkit is primarily designed for use on hybrid capture sequencing data, where off-target reads are …
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extracting the 16S rRNA gene and doing an OTU clustering will illustrate the diversity captured with targeted amplicon sequencing
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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These assays are in CELLxGENE (some are still private) but not addressed yet by the Census schema as included or explicitly excluded
```
10x transcription profiling
SORT-seq
CEL-seq
in situ seque…
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Hello, I want to add your data to my studies.
Could you provide the expression matrixs from your paper:
`High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptio…
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Dear aroth85,
Thank you for developing pyclone-vi,
I would like to use the software to caculate CCF from targeted DNA sequencing data. I have performed SNV/INDEL calling and CNV to obtain minor…
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Hi,
I'm trying to use mTR to do the repeat identification in targeted Nanopore sequencing. But when I run the command `mTR target1.fasta`, it only gave the output for one read and stopped with `Seg…