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**No ay of searching higher level taxonomic classification for fishes**
I recently ran this search to try and find all fish records from Nepal - https://www.gbif.org/occurrence/search?basis_of_record…
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An aspect that's different from R taxize is that I didn't want to bring the interactive part to this package. That is, the taxize get_* fxns have a prompt if there's more than one result for a taxon n…
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- CLARK-S uses a spaced discriminative database for classification
- taxonomic profiling using CLARK-S with Bacteria + Viruses database on genus/phylum/domain/species levels
- taxonomic profiling u…
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provide a way to calculate differences in taxonomic classification for samples.
ref #367
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**Bug Description**
In the course of going through the Parkinson’s Mouse Tutorial, we noticed that when looking at the taxonomic classification results using the classifier retrained with the informa…
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I have created a "Biota Cubana" Scratchpad. I will report here if the automatic emails are received.
As this is a Scratchpad for all species reported from one island, I wonder whether the consolidate…
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- [x] Sequencing technologies
- [x] Assembly, coassembly, binning
- [x] MAG annotation
- [x] MAG quality assessment
- [x] Taxonomic classification
- [ ] Current environmental MAG databases
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**Is your request related to a specific disease? Please describe.**
'common cold' (DOID:10459) and 'scarlet fever' (DOID:8596) are not properly classified in the infectious disease branch (should be …
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Hello,
I would like to use BLCA for taxonomic classification of 18S rRNA data. Would you recommend to use higher confidence score thresholds for lower taxonomical levels (family, genus, species)?
…
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There are a few issues with the way we have taxonomy table currently in PathoStat. Hope this can start a discussion about how we want to handle these things.
- **Should be able to get the ranks withou…