-
Hello,
I am trying to use mpa2meco to generate a microtable from a Kraken2/Bracken abundance table generated by the 16S ONT Epi2me workflow. Although this 16S workflow utilizes Kraken2, the output…
-
I downloaded refseq database and run kaiju for taxonomic assignment of sample DRR496098 downloaded from SRA, in the kaiju/bin directory using the command below;
./kaiju -t ../../kaiju_db/nodes.dmp -f…
-
Currently the documentation instructs and the code downloads `prot.accession2taxid.gz` which doesn't have all of the `nr` accessions.
Proteins that aren't found in `prot.accession2taxid.gz` are assi…
-
Hey there, @shenwei356 :)
Thanks again for not only additional wonderful software, but excellent documentation as usual!
I'm looking for a better way to taxonomically classify predicted coding …
-
Hello, We've performed Metannoatae on big metagenomic file(translated) against hmm of interest. Though we got the results, more than 99% remained to be assigned.
![canvas](https://user-images.gith…
-
Change "Min percent identity" when running assign_taxonomy.py -m blast in Qiime
-
## Motivation
I want to give users access to a page not in the menu
### Is your feature request related to a problem? Please describe.
I cannot restrict editing to a particular page if it is not …
-
Hi Joe, I am trying to use the script to assign taxonomy to some 18S sequences. For this, I have generated my own blast database from a blast search of first 10 hits for each of my sequences and tax f…
-
Support import of annotation transfer from MapMyCells JSON or from CSV.
CSV must have cell ID column, transferred label, optionally heirarchy level of transferred label. Optionally confidence scor…
-
I am getting the following error and I cannot resolve it. Can you help me find the solution to this?
ERROR ~ Error executing process > 'AUTOMETA:TAXON_ASSIGNMENT:LCA:PREP_DBS (Preparing db cache fr…