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Hi, @Xiyue-Wang
In paper, we mentioned that "TCGA-RCC is a subset of TCGA for the classification of three subtypes of (TCGA-KICH), (TCGA-KIRC), and (TCGA-KIRP). There are a total of 884 FFPE WSIs…
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Hello,
I am doing some analyses using TCGA data and noticed that the recommendation is to download the pre-calculated xCell data. However, I noticed that this data does not include normal (NT) samp…
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Hello!
Thank you for the benchmark! From your paper, you used data described at [phs000178.v11.p8](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178.v11.p8)? From that …
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excuse me ,I am facing an issue when running CIBERSORT package:
when I try this:
```
library(CIBERSORT)
sig_matrix
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Hi,
Thanks for a very comprehensive resource! I have compiled [a list](https://www.dropbox.com/s/b6ny549bs8mb6f9/tcga_clinical_tissue_diagnosis.v18_20190708.tsv?dl=0) of unique diagnoses assigned to …
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Right now we can only load DCNA data for single molecular profile at a time. On a multi-study query, this results in at least a single call per study. Instead api should accept a list of profile/sam…
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What are the chances the TCGA data used in the README or the code used to collect it from TCGAbiolinks could be made available?
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Hi Jakob and co-authors,
Thank you for your contribution for creating a model to segment MR structures! My lab is very excited to try it out.
I was curious about the data that you used from Ima…
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Hi,
Could you upload a patch example with its slide name,x and y position for each magnitude? I m trying to replicate your numbers with even a threshold of 30 but I still obtain 30000 patches at 20x.…
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**Title:** Automatically label medical data from diagnosis reports
**Project Lead:** Frank Langbein, frank@langbein.org
**Description:** We wish to automatically label medical diagnosis data (MRI,…