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Hello,
Our lab currently trying the cDNA-PCR barcoding kit (PCB111.24) for our _de novo_ assembly transcriptome project. Our issue is that after using pychopper, we still somehow have the barcode se…
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Need a "go to" page to find our own data.
- transcriptome assemblies
- genome assemblies
- genome indexes (i.e. bowtie/bowtie2 index files)
kubu4 updated
6 years ago
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Here is what the nextflow version is currently outputting in a transXpress_results folder in the working directory of the pipeline execution (using rnaSPAdes as an example):
```
0226_Chattonella_sub…
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Hi,
Can I use treefam scan with cDNA sequences like those coming from transcriptome assemblies (e.g. Trinity)?
Thanks,
A.
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Hello,
I used rnabloom to construct a transcriptome from direct RNA data with the following:
rnabloom -long all_reads.fastq -stranded -t 25 -outdir dir/ -u true
The rnabloom.transcripts.fa a…
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
./next…
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Recently, we use bayesembler to assemble transcriptome. We found 2 errors.
First, the samtools in dependencies folder can not work well, but rebuild samtools can work well.
Second
bayesembler: /seqdat…
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Does NextPolish work on transcriptome assembly? If so, is there anything I should do differently with regards to running NextPolish? Thanks!
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### Publication and Data Information
Refer here for Pistacia transcriptome assembly. This issue will pertain only to the loading to the live site.
https://github.com/mestato/statonlabprivate/wiki/Pi…
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Hi @macmanes I'm trying to run orthofuser.mk on a set of transcriptomes (same species) that have been generated using the Oyster River Protocol (ORP). I'm running a docker container that has the most …