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see this nice list:
https://github.com/seandavi/awesome-cancer-variant-databases
related to #15, @dnahotline, @mbrush @stuppie @pnrobinson can you prioritize these and make a Dipper/Wikidata/BioTh…
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Hi everyone,
I've used Demuxlet since its first release now and I always got constant overestimation of doublets across multiple independent experiments.
Demuxlet predicted doublets percentage with…
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Hi,
I've encountered a sample where the CNV prediction throws an error. All other samples were processed fine. I couldn't find any (obvious) problems within the counts or the VCF file. The R-output i…
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Status: ACTIVE
Platform contact; TBD
Researcher contact: TBD (will ask Matt Wheeler)
Next steps: requires moving BAM files into AWS hot storage at SRA for DRS accessibility. This use case also re…
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This issue is for broadly tracking the full process for onboarding collaborators (an EPIC in jira speak). At the moment we're focusing on WGS, but as we will be processing exomes, we should make sure …
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So far, all of the disease mappings to single diseases represent 'causal' relation.
i.e. a gene has been functionally linked to the disease phenotypes.
I also have examples I have noted where a …
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Hi,
I'm trying to run FINSURF on a list of SNPs, but have a couple of questions.
1- I could not find anywhere in the github repo what build I should use to supply my variants. My guess was it's h…
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Dear Zikun
CARMA is becoming a fundamental tool in our genomic analyses at our lab, and I really want to thank you for both the software and the support procided via this wiki. We are planning on con…
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The way start positions are calculated causes issues when alleles span the boundaries of exons and the coding sequence itself.
For exon boundaries:
The error stems from `FuncotatorUtils::getStar…