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Hello! I have a set of metagenomes of samples that were obtained from a subsurface petroleum reservoir. These samples comprise different types (_i.e.,_ formation water, production water, crude oil, an…
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Hi @asteinberger9 , thank you so much for the seq_scripts repo. I successfully ran simper.pretty and now I'd like to use kruskal.pretty. However, I keep getting this error message:
Error in`[
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Hi, I am working on microbiota analysis for sequence obtained from shoreline biome kit. I have obtained ASV .tax file, .biom feature table and ASV .fasta file from DADA2 pipeline following the analysi…
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Hey, Miao ：
Thanks for your helpful tool ~
I find the function **getpubmedtbl** can't generate the column of date correctly ~
Best
Huahui
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Discussion on how to construct meta titles and descriptions:
https://docs.google.com/document/d/1R8ocUllm8EV3SPd5XBkY1rIC8sZgYVV1A93dsA7QujQ/edit#heading=h.kh7oxyc39a8c
DoD:
1. Add tissue descriptio…
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Hello there,
I'm looking to show the correlation between relative abundance of some of my SVs and a continuous variable. However, can't seem to figure out how to access geom_smooth's data on the R2…
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Hello,
I'm trying to run your Visium pipeline. I ran Visium_pipeline.sh on my visium sample (that employs UMI_annotator.py - which is also provided).
I get the python output and the pathseq outpu…
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Hi @SilasK,
I am analyzing mice fecal metagenomes and was wondering if you would be interested in generating a [struo database](https://github.com/leylabmpi/Struo2) for cmmg?
Best,
Florentin
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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Currently, I am working with a dataset of gut microbiota from an experiment on pigs tested with three treatments (red meat, dss, and read meat+dss) against control group.
The experiment was done in t…