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- **Name:** Sus Scrofa
- **Common name:** pig
Just starting this - will continue in time
https://en.wikipedia.org/wiki/Sus_(genus)
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Backproping through `getindex` is pretty slow at the minute, due to the need to make copies of the entire array on the reverse-pass, and to fill it with zeros. The current implementation basically has…
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hi i had bam files unsorted i created with STAR. then i used the Quantify IR bam mode (on unsorted files) with reference genome i buit with irfinder
then i tried to do the Generalized Linear Model w…
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The open-access portion of simple somatic mutation data download becomes unavailable when a user is logged into the Data Portal. This issue was brought to attention when a user recently contacted us (…
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Hi,
Thanks for developing such a wonderful tool for long-read analysis. Recently, I performed Severus to call somatic mutations between paired tumor-normal samples using the command
`--target-bam…
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# primary tasks
- [x] download TCGA MAF files
- [x] Map TCGA rows to proteins from our datasets
- DONT INCLUDE KIBA UNTIL WE GET ALL AFLOW CONFS (to ensure consistent test sets and so we don't …
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Hello there,
I'm trying to run Coalescent Bayesian Skyline analysises with Beast 2.7.2 on Fedora 36, but it bugs with one of my files:
`java.lang.NullPointerException: Cannot invoke "beast.base.evol…
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[testng] 22:07:50.731 [SharedPool-Worker-2] DEBUG c.s.c.lucene.service.LuceneIndex - actional_dashboard.reportconfig.lucene update document Document with term _primary_key:[0 10 61 63 30 39 37 34 3…
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This issue lists Renovate updates and detected dependencies. Read the [Dependency Dashboard](https://docs.renovatebot.com/key-concepts/dashboard/) docs to learn more.
## Ignored or Blocked
These are…
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